necom Documentation

Modify tree topology by optionally removing branch lengths, comments, or labels.

Input:

• A Newick tree file.

Notes:

• By default, branch lengths and comments are removed.
• Use --bl to keep branch lengths.
• Use --comment / -c to keep comments.
• Use -I to remove internal labels.
• Use -L to remove leaf labels.

Examples:

1. Topology only (remove lengths and comments) necom nwk topo tree.nwk

2. Keep branch lengths but remove comments necom nwk topo tree.nwk --bl

3. Remove internal node labels necom nwk topo tree.nwk -I