necom Documentation

Manipulate, analyze, and visualize Newick trees.

Input:

• A Newick tree file or stdin.

Notes:

• Subcommand groups:
  • Information: stat, label, distance
  • Manipulation: order, prune, rename, replace, reroot, subtree, topo
  • Visualization: comment, indent, to-dot, to-forest, to-svg, to-tex
• Run necom nwk <subcommand> --help for command-specific options.
• Reads from stdin if input file is ‘stdin’.

Examples:

1. Show available subcommands necom nwk --help